- Relaxation and Photochemistry of Nitroaromatic Compounds: Intersystem Crossing Through 1ππ∗ to Higher 3ππ∗ States, and NO· Dissociation in 9-Nitroanthracene. A Theoretical Study
J. Jara-Cortés, A. Resendiz-Pérez, J. Hernández-Trujillo, J. Peón
Journal of Physical Chemistry A, 129, 3220–3230 (2025). - Determination of Oscillation Periods of Biological Clocks
(artículo de docencia en física)
J. Hernández–Trujillo, M. Franco–Pérez, A. Pisanty–Baruch.
The Physics Educator, 2450019 (2025). - A Dynamical Density Field That Shows the Localizability of Electrons: The Exchange-Correlation Ehrenfest Force
A. J. Mortera-Carbonell, E. Francisco, Á. Martín Pendás, and J. Hernández-Trujillo
Journal of Chemical Theory and Computation, 20, 9894–9905 (2024). - Intra and Interatomic Energy contributions in the Photophysical Relaxation of Small Aromatic Molecules
J. Jara-Cortés, J. A. Pérez-Pimienta, J. Woo Park, J. Hernández-Trujillo
ChemPhotoChem, 202300291 (2024). - The Ehrenfest Force Field: A Perspective Based on Electron Density Functions
A. J. Mortera-Carbonell, E. Francisco, A. Martín Pendás, J. Hernández-Trujillo
J. Chem. Phys., 159, 234110 (2023) - Quantum Dynamics of the Internal Motion of Biphenyl-Based Molecular Junctions
E. Leal Sánchez, J. Hernández-Trujillo
Journal of Chemical Physics 159, 054702 (2023) - Primary Photophysics of Nicotinamide Chromophores in Their Oxidized and Reduced Forms
M. M. Reza, J. Durán-Hernández, B. González-Cano, J. Jara-Cortés, R. López-Arteaga, A. Cadena-Caicedo, L. Muñoz-Rugeles, J. Hernández-Trujillo, J. Peon
Journal of Physical Chemistry B 127, 8432−8445 (2023). - A Fast Approximate Extension of the Interacting Quantum Atoms Energy Decomposition to Excited States
Jesús Jara-Cortés, Chérif F. Matta, Jesús Hernández-Trujillo
Journal of Computational Chemistry 43, 1068-1078 (2022) - Control of Molecular Conformation and Crystal Packing of Biphenyl Derivatives
B. Landeros Rivera, J. Hernández Trujillo
ChemPlusChem 87, e202100492 (2022) - Non-Covalent Interactions in the Biphenyl Crystal: Is the Planar Conformer a Transition State?
B. Landeros-Rivera, V. Jancik, R. Moreno-Esparza, D. Martínez Otero, J. Hernández- Trujillo
Chemistry - A European Journal 27, 11912-11918 (2021) - Implementation of the Interacting Quantum Atoms Energy Decomposition with the CASPT2 Method
Jesús Jara-Cortés, E. Leal-Sánchez, E. Francisco, J. A. Pérez-Pimienta, Á. Martín Pendás, J. Hernández-Trujillo
Physical Chemistry Chemical Physics 23 27508-27519 (2021) - Feynman Force Analysis of Chemical Processes in Terms of Topological Atomic Contributions
J. Jara-Cortés, E. Leal-Sánchez, J. Hernández-Trujillo
Journal of Physical Chemistry A 124, 6370-6379 (2020) - Photochemical and Antibacterial Properties of Ruthenium Complex of N,N’-bis(Benzimidazole- 2yl-Ethyl) Ethylenediamine Under visible light: Experimental and Theoretical Studies
J. G. Hernández-Hernández, C. A. Huerta Aguilar, P. Thangarasu, J. Hernández-Trujillo.
Journal of Molecular Structure 1203, 127377 (2020) - Latin American Contributions to Quantum Chemical Topology
Marco A. García-Revilla, Fernando Cortés-Guzmán,Tomás Rocha-Rinza, Jesús Hernández-Trujillo
International Journal of Quantum Chemistry 119, e25789 (2019) - Partially Covalent Two-Electron/Multicentric Bonding between Semiquinone Radicals
K. Molcanov, Ch. Jelsch, B. Landeros, J. Hernandez-Trujillo, E. Wenger, V. Stilinovic, B. Kojic-Prodic, E. C. Escudero-Adan.
Crystal Growth & Design 19, 391-402 (2019) - Exotic Bonding Regimes Uncovered in Excited States
JL Casals-Sainz, J Jara-Cortés, J. Hernández-Trujillo, JM Guevara-Vela, E Francisco, Á Martín Pendás
Chemistry - A European Journal 25 12169-12179 (2019). - Unveiling the Role of Intra and Interatomic Interactions in the Energetics of Reaction Schemes: a Quantum Chemical Topology Analysis
Jesús Jara-Cortés, Bruno Landeros-Rivera, Jesús Hernández-Trujillo
Physical Chemistry Chemical Physics 20, 27558-27570 (2018) - Energetic Analysis of Conjugated Hydrocarbons Using the Interacting Quantum Atoms Method
Jesús Jara-Cortés, Jesús Hernández-Trujillo
Journal of Computational Chemistry 39, 1103-1111 (2018) - Charge Transfer and Electron Localization as the Origin of the Anomeric Effect in the O-C-O Segment of Dimethoxymethane and Spiroketals
Martha E. Buschbeck-Alvarado, Gabriel Hernández‐Fernández, Jesús Hernández‐Trujillo, Fernando Cortés‐Guzmán, Gabriel Cuevas
Journal of Physical Organic Chemistry 31, e3793 (2018) - Chemical Bonding in Excited States: Energy Transfer and Charge Redistribution from a Real Space Perspective
Jesús Jara-Cortés, José Manuel Guevara-Vela, Ángel Martín Pendás, Jesús Hernández-Trujillo
Journal of Computational Chemistry 38, 957-970 (2017) - Theoretical Study of Intermolecular Interactions in Crystalline Arene–Perhaloarene Adducts in Terms of the Electron Density
Bruno Landeros-Rivera, Rafael Moreno-Esparza, Jesús Hernández-Trujillo
RSC Advances 6, 77301-77309 (2016) - Electron Density Analysis of Bent Aromatic Molecules: Intramolecular Interactions in Small Paracyclophanes
Jesús Hernández-Trujillo
Theoretical Chemistry Accounts 135, 198 (2016) - Electron Delocalization and Electron Density of Small Polycyclic Aromatic Hydrocarbons in Singlet Excited States
Mar Estévez-Fregoso, Jesús Hernández-Trujillo
Physical Chemistry Chemical Physics, 18, 11792-11799 (2016) - The Rotational Barrier of Ethane and Some of its Hexasubstituted Derivatives in Terms of the Forces Acting on the Electron Distribution
Fernando Cortés-Guzmán, Gabriel Cuevas, Ángel Martín Pendás, Jesús Hernández-Trujillo
Physical Chemistry Chemical Physics, 17, 19021-19029 (2015) - Electron Density Analysis of Aromatic Complexes in Excited Electronic States: The Benzene and Naphthalene Excimers
Jesús Jara-Cortés, Tomás Rocha-Rinza, Jesús Hernández-Trujillo
Computational and Theoretical Chemistry, 1053, 220-228 (2015) - Hydrogen-Bond Cooperative Effects in Small Cyclic Water Clusters as Revealed by the Interacting Quantum Atoms Approach
J. M. Guevara-Vela, R. Chávez-Calvillo, M. García-Revilla, J. Hernández-Trujillo, O, Christiansen, E Francisco, Ángel Martín Pendás, T. Rocha-Rinza
Chemistry - A European Journal, 19, 14304-14315 (2013) - The Ehrenfest Force Field: Topology and Consequences for the Definition of an Atom in a Molecule
A. Martín Pendás, J. Hernández-Trujillo
Journal of Chemical Physics, 137, 134101 (2012) - Quantum Molecular Dynamics of the Topological Properties of the Electron Density: Charge Transfer in H3+ and LiF
Rodrigo Chávez-Calvillo, Jesús Hernández-Trujillo
Journal of Physical Chemistry A, 115(45), 13036-13044 (2011) - Interpretation of Vicinal Proton-Proton Coupling Constants of Heteroaromatic Molecules in Terms of Topological Electron Density Descriptors
Ernesto Sánchez-Mendoza, Jesús Hernández-Trujillo
Magnetic Resonance in Chemistry 48, 866-872 (2010) - Application of the Additivity of Group Energies to Understand Conformational Preference: the Anomeric Effect
Fernando Cortés-Guzmán, Jesús Hernández-Trujillo, Gabriel Cuevas
Physical Chemistry Chemical Physics, 12, 13261-13265 (2010) - Theoretical Analysis of Hydrogen Bonding in Catechol-n(H2O) Clusters (n=0...3)
Berenice Gómez-Zaleta, Rodolfo Gómez-Balderas, Jesús Hernández-Trujillo
Physical Chemistry Chemical Physics 12, 4783-4790 (2010) - Theoretical Analysis of Intermolecular Interactions of Selected Residues of Triosephosphate Isomerase from Trypanosoma cruzi with its Inhibitor 3-(2-Benzothiazolylthio) -1-propanesulfonic Acid
Rodrigo Chávez-Calvillo, Miguel Costas, Jesús Hernández-Trujillo
Physical Chemistry Chemical Physics 12, 2067-2074 (2010) - Electron Density Analysis of Tautomeric Mechanisms of Adenine, Thymine and Guanine and the pairs of Thymine with Adenine or Guanine
Luis Mejía-Mazariegos, Jesús Hernández-Trujillo
Chemical Physics Letters 482, 24-29 (2009) - Energetic and Electron density Analysis of Hydrogen Dissociation of Protonated Benzene
Marco García-Revilla, Jesús Hernández-Trujillo
Physical Chemistry Chemical Physics 11, 8425-8432 (2009) - Hydrogen-Hydrogen Bonding in Biphenyl Revisited
Jesús Hernández-Trujillo, Chérif F. Matta
Structural Chemistry 18, 849-857 (2007) - Forces in Molecules
Jesús Hernández-Trujillo, Fernando Cortés-Guzmán, De-Chai Fang, Richard F. W. Bader
Faraday Discussions 135, 79-95 (2007) - Molecular Characterization of p-Alkyl Phenol-n-Heptane Interactions and Their Implication as Asphaltene Dispersants
Jesús Hernández-Trujillo, José Manuel Martínez-Magadán, Isidoro García-Cruz
Energy & Fuels 21, 1127-1132 (2007) - Chemical Bonding: From Lewis to Atoms in Molecules
Richard F. W. Bader, Jesús Hernández-Trujillo, Fernando Cortés-Guzmán
Journal of Computational Chemistry 28, 4-14 (2007) - Experimental and Theoretical Analysis of Vicinal and Long-Range Proton-Proton Coupling Constants for Anthracene Derivatives
Ernesto Sánchez–Mendoza, Jesús Hernández-Trujillo, Federico del Río-Portilla
Journal of Physical Chemistry A 111, 8264-8270 (2007) - The Nature of Benzene-Cation Interactions from the Topology of the Electron Distribution
Tomás Rocha-Rinza, Jesús Hernández-Trujillo
Chemical Physics Letters 422, 36-40 (2006) - Application of Molecular Simulation to Calculate Miscibility of a Model Asphaltene Molecule
Luis Vicente, César Soto, Horacio Pacheco-Sánchez, Jesús Hernández-Trujillo, José Manuel Martinez-Magadán
Fluid Phase Equilibria 239, 100-106 (2006) - Topological Analysis of the Electron Density and of the Electron Localization Function of Pyrene and its Radicals
Jesús Hernández-Trujillo, Isidoro García-Cruz, José Manuel Martínez-Magadán
Chemical Physics 308, 181-192 (2005) - The Nonexistence of Repulsive Diaxial Interactions in Monosubstituted Cyclohexanes
Fernando Cortés-Guzmán, Jesús Hernández-Trujillo, Gabriel Cuevas
Journal of Physical Chemistry A 107(44), 9253-9256 (2003) - El análisis conformacional a la luz de la teoría topológica de átomos en moléculas. Contribución de la energía atómica a la energía molecular
Fernando Cortés Guzmán, Jesús Hernández-Trujillo, Gabriel Cuevas
Revista de la Sociedad Química de México 47(2), 190-201 (2003) - Bonding in Polycyclic Aromatic Hydrocarbons in Terms of the Electron Density and Electron Delocalization
Chérif F. Matta, Jesús Hernández-Trujillo
Journal of Physical Chemistry A 107(38), 7496-7504 (2003) - Chemical Bonding in Ternary Magnesium Hydrides
Emilio Orgaz, Jesús Hernández-Trujillo
International Journal of Quantum Chemistry 94(3), 150-164 (2003) - Experimental and Theoretical Study of Aromatic-Aromatic Interactions. Association Enthalpies and Central and Distributed Multipole Electric Moments Analysis
Silvia Pérez-Casas, Jesús Hernández-Trujillo, MiguelCostas
Journal of Physical Chemistry B 107(17), 4167-4174 (2003) - Hydrogen-Hydrogen Bonding: A Stabilizing Interaction in Molecules and Crystals
Chérif F. Matta, Jesús Hernández -Trujillo, Ting-Hua Tang, Richard F. W. Bader
Chemistry - A European Journal 9(9), 1940-1951 (2003) - Proton Spin-Spin Coupling and Electron Delocalization
Chérif F. Matta, Jesús Hernández-Trujillo, Richard F. W. Bader
Journal of Physical Chemistry A 106(32), 7369-7375 (2002) - Properties of Atoms in Molecules: Construction of One-Density Matrix from Functional Group Densities
J Hernández-Trujillo, R. F. W. Bader
Journal of Chemical Physics 115(23), 10595-10607 (2001) - A Theoretical Study of Hydroxycarbene as a Model for the Homolysis of Oxy and Dioxycarbenes
Darren L. Reid, Jesús Hernández-Trujillo, John Warkentin
Journal of Physical Chemistry A 104(15), 3398-3405 (2000) - Properties of Atoms in Molecules: Atoms Forming Molecules
Jesús Hernández-Trujillo, Richard F. W. Bader
Journal of Physical Chemistry A 104(8), 1779-1794 (2000) - MP2 ab Initio Calculations of the Hexafluorobenzene-benzene and -Monofluorobenzene Complexes
J. Hernández-Trujillo, F. Colmenares, G. Cuevas, M. Costas
Chemical Physics Letters 265, 503-507 (1997) - Molecular Quadrupole Moments for the Series of Fluoro- and Chlorobenzenes
Jesús Hernández-Trujillo, Alberto Vela
Journal of Physical Chemistry 100(16), 6524-6530 (1996) - Quadrupole Interactions in Pure Non-dipolar Fluorinated or Methylated Benzenes and their Binary Mixtures
Jesús Hernández-Trujillo, Miguel Costas, Alberto Vela
Journal of the Chemical Society, Faraday Transactions 89(14), 2441-2443 (1993 - Determinación Complejométrica de Cu(II) con A.E.D.T.
Pedro Luis López de Alba, J. Jesús Hernández Trujillo
Revista de la Sociedad Química de México 34(1), 17-19 (1990)
Mis actividades de investigación involucran actualmente las aplicaciones de la topología química cuántica (TQC) al estudio de una variedad de sistemas. En este campo, se estudian campos escalares y vectoriales de relevancia química para entender las interacciones en moléculas y sóludos. Entre estos campos, destaca la densidad electrónica, la cual es el objeto central de estudio en la teoría cuántica de átomos en moléculas (QTAIM). En la QTAIM se hace una partición rigurosa del espacio tridimensional que permite definir a los átomos que forman una molécula. Dicha partición se basa en las propiedades de la densidad electrónica molecular. A diferencia de otros esquemas de partición, los criterios utilizados en esta teoría son consistentes con todos los postulados de la mecánica cuántica y, una vez realizada, es posible conocer todas las propiedades de primer y segundo orden de los átomos que forman la molécula, en consistencia con las propiedades del sistema molecular completo.
Conceptos tales como:
- Enlace químico
- Estructura molecular
- Deslocalización electrónica
- Pares electrónicos
- Fuerzas en química
son descritos cuantitativamente en esta teoría. En mi grupo de trabajo utilizamos herramientas de la TQC para entender el enlace químico y la transferencia de carga y energía en el espacio tridimensional para moléculas en estados electrónicos basal y excitados. También estudiamos las fuerzas que actúan sobre la distribución electrónica en términos del campo vectorial de la llamada fuerza de Ehrenfest.
Adicionalmente, estudiamos la evolución de procesos moleculares en tiempo real mediane la solución de la ecuación de Schrödinger dependiente del tiempo en procesos en estados basal y excitados.
- Interacciones de van der Waals.
- Aromaticidad en compuestos orgánicos.
- Efectos conformacionales.
- Estructura electrónica molecular.
- Fuerza de Ehrenfest y enlace químico.
- Estados electrónicos excitados.
- Dinámica cuántica molecular.
Mi investigación la realizo con:
Investigadores
José de Jesús Jara Cortés | Universidad Autónoma de Nayarit, México |
Dr Bruno Landeros Rivera |
Facultad de Química, UNAM, México |
Dr Ángel Martín Pendás | Universidad de Oviedo, España |
Dr Evelio Francisco Miguelez | Universidad de Oviedo, España |
Dra. Edith Leal Sánchez | Universidad de Dalhousie, Canadá |
Alumnos
Aldo Mortera Carbonell |
- Teoría de átomos en moléculas (Página de Richard Bader)
- Cherif Matta's web site at Mount Saint Vincent University, Canadá
Lista actualizada en marzo de 2025
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- Real-Space Description of Molecular Processes in Electronic Excited States
Jesús Jara-Cortés, Jesús Hernández-Trujillo
En: Advances in Quantum Chemical Topology Beyond QTAIM
J. I. Rodriguez, F. Cortés-Guzmán, S. M. Anderson (editores)
Chapter 7, pags 165-192. ISBN 9780323908917
Elsevier, Amsterdam 2023.
- Real-Space Description of Molecular Processes in Electronic Excited States
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- Applications of the Quantum Theory of Atoms in Molecules in Organic Chemistry-Charge Distribution, Conformational Analysis and Molecular Interactions
Jesús Hernández-Trujillo, Fernando Cortés-Guzmán, Gabriel Cuevas.
En: The Quantum Theory of Atoms in Molecules
C. F. Matta, R. J. Boyd (editores).
ISBN 978-3-527-30748-7
Wiley-VHC, Weinheim, 2007.
- Applications of the Quantum Theory of Atoms in Molecules in Organic Chemistry-Charge Distribution, Conformational Analysis and Molecular Interactions